Imaging in developmental biology: a laboratory manual (New York, 2011). - ОГЛАВЛЕНИЕ / CONTENTS
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ОбложкаImaging in developmental biology: a laboratory manual / ed. by J.Sharpe, R.O.Wong. - Cold Spring Harbor; New York: Cold Spring Harbor Laboratory Press, 2011. - xv, 883 p.: ill. (some col.). - Incl. bibl. ref. - Ind.: p.863-883. - ISBN 978-0-87969-939-0
 

Оглавление / Contents
 
Preface to the Book Series ................................... xiii
1  Introduction ................................................. 1
   James Sharpe and Rachel O. Wong

SECTION 1. MODEL SYSTEMS
2  Live Imaging of Caenorhabditis elegans Embryogenesis ........ 11
   Zhirong Bao and John I. Murray
3  Live Imaging of Drosophila Development ...................... 23
   Jessica R.K. Seifert and Ruth Lehmann
4  Live Imaging of Zebrafish Development ....................... 49
   Leanne Godinho
5  Live Imaging of Cells and Tissues in Xenopus Embryos ........ 69
   John B. Wallingford
6  Live Imaging of Avian Embryos ............................... 85
   Paul M. Kulesa and Scott E. Fraser
7  Live Imaging of Mouse Embryos .............................. 101
   Monica D. Garcia, Ryan S. Udan, Anna-Katerina
   Hadjantonakis, and Mary E. Dickinson

SECTION 2. CELLS

Labeling Cells for Live Cell Imaging
8  Electroporation of Chick and Mouse Embryos ................. 119
   Catherine E. Krull, Fengyun Su, Mary E. Swartz, Johann 
   Eberhart, Rebecca McLennan, Yaxiong Chen, and Paul 
   A. Trainor
9  Single-Cell Electroporation in Xenopus ..................... 143
   Xue Feng Liu and Kurt Haas
10 Single-Neuron Labeling Using Genetic Methods ............... 157
   J. Sebastian Espinosa, Joy S. Tea, and Liqun Luo
11 Ballistic Labeling of Developing Retinal Neurons ........... 177
   Josh L. Morgan and Daniel Kerschensteiner
12 Multicolor Brainbow Imaging in Zebrafish ................... 191
   Y. Albert Pan, Jean Livet, Joshua R. Sanes, Jeff W. 
   Lichtman, and Alexander F. Schier
13 Genetic Labeling of Neurons in Mouse Brain ................. 199
   Z. Josh Huang, Hiroki Taniguchi, Miao He, and Sandra
   Kuhlman

Cell Fate, Differentiation, and Migration
14 Live Imaging of Neuroblast Lineages within Intact 
   Larval Brains in Drosophila ................................ 217
   Clemens Cabernard and Chris Q. Doe
15 Visualizing Cell Contacts and Cell Polarity in
   Caenorhabditis elegans Embryos ............................. 229
   Timothy Walston and Jeff Hardin
16 In Vivo Birthdating in Zebrafish ........................... 245
   Y. Albert Pan, Sophie J.C. Caron, and Alexander
   F. Schier
17 Imaging Retinal Progenitor Lineages in the Developing
   Zebrafish Retina ........................................... 253
   Patricia Jusuf, William A. Harris, and Lucia Poggi
18 Imaging the Development of the Fish Lateral-Line System .... 271
   Kevin Schuster and Alain Chysen
19 Imaging Cell Migration in Chick Explant Cultures ........... 291
   Jennifer C. Kasemeier-Kulesa, Frances Lefcort, Scott 
   E. Fraser, and Paul M. Kulesa
20 Imaging Cell Movements in Egg Cylinder Stage Mouse 
   Embryos .................................................... 299
   Shankar Srinivas
21 Marking Cells for Imaging Analysis of Morphogenetic
   Behavior and Cell Fates in Mouse Embryos ................... 311
   Nicolas Fossat, David A.F. Loebel, Vanessa Jones, 
   Poh-Lynn Khoo, Heidi Bildsoe, and Patrick P.L. Tam
22 Visualizing Spatiotemporal Dynamics of Multicellular 
   Cell-Cycle Progressions .................................... 331
   Asako Sakaue-Sawano and Atsushi Miyawaki
23 Time-Lapse Imaging of Fluorescently Labeled Live Cells 
   in the Embryonic Mammalian Forebrain ....................... 341
   Stephen C. Noctor

Imaging Circuit Formation in the Nervous System
24 Imaging Calcium Transients in Developing Xenopus Spinal
   Neurons .................................................... 357
   Nicholas C. Spitzer, Laura N. Borodinsky and Cory
   M. Root
25 Imaging Axon Pathfinding in Xenopus and Zebrafish 
   In Vivo .................................................... 373
   Louis Leung and Christine E. Holt
26 Axons and Dendrites: In Vivo Time-Lapse Imaging of 
   Neuronal Development in Xenopus ............................ 387
   Edward S. Ruthazer, Anne Schohl, Neil Schwartz, Aydin
   Tavakoli, Marc Tremblay, and Hollis T. Cline
27 In Vivo Imaging of Synaptogenesis in Zebrafish ............. 405
   James D. Jontes and Michelle R. Emond
28 Live Imaging of Developing Retinal Circuits ................ 417
   Philip R. Williams, Joshua L. Morgan, Daniel 
   Kerschensteiner, and Rachel O.L. Wong
29 Imaging the Developing Mammalian Neuromuscular Junction
   In Vivo .................................................... 435
   Stephen C. Turney Mark K. Walsh, and Jeff W. Lichtman
30 Live Imaging of Developing Hippocampal Neurons in
   Culture .................................................... 449
   Stefanie Kaech, Chun-Fang Huang, and Gary Banker
31 Imaging of Synapse Formation and Function in Neuronal
   Cell Cultures by Quantitative Immunocytochemistry .......... 467
   Camin Dean and Peter Scheiffele
32 Simultaneous Imaging of Structural Plasticity and
   Calcium Dynamics in Developing Dendrites and Axons ......... 479
   Friederike Siegel and Christian Lohmann
33 Simultaneous Patch-Clamping and Calcium Imaging in
   Developing Dendrites ....................................... 491
   Thomas Kleindienst and Christian Lohmann
34 Imaging Synaptic Protein Dynamics in the Cerebral Cortex
   In Vitro and In Vivo ....................................... 499
   Robby M. Weimer, Travis C. Hill, Andrew M. Hamilton,
   and Karen Zito
35 In Vivo Imaging of Axonal and Dendritic Structures in
   Developing Cortex .......................................... 513
   Alberto Cruz-Martin and Carlos Portera-Cailliau

SECTION 3. DYNAMIC TISSUES AND ORGANS
36 Quantifying the Bicoid Morphogen Gradient in Living Fly
   Embryos .................................................... 523
   Alexander H. Morrison, Martin Scheeler, Julien Dubuis,
   and Thomas Gregor
37 Quantitative Imaging of Morphogen Gradients in 
   Drosophila Imaginal Discs .................................. 533
   Anna Kicheva, Laurent Holtzer, Ortrud Wartlick, Thomas
   Schmidt, and Marcos González-Gaitán
38 Methods to Investigate Molecular Mechanisms and Cellular
   Mechanics Responsible for Morphogenesis in Xenopus 
   laevis Embryos ............................................. 551
   Hye Young Kim and Lance A. Davidson
39 Notochord Formation in Zebrafish ........................... 569
   Samantha J. England and Richard J. Adams
40 High-Resolution, Multiphoton Time-Lapse Imaging of Early
   Chick Embryos .............................................. 581
   Octavian Voiculescu and Claudio D. Stern
41 Four-Dimensional Fluorescent Imaging of Embryonic Quail
   Development ................................................ 593
   Christie A. Canaria and Rusty Lansford
42 Imaging Kidney Development ................................. 605
   Frank Costantini, Tomoko Watanabe, Benson Lu, Xuan Chi, 
   and Shankar Srinivas
43 Practical Considerations for Long-Term Time-Lapse 
   Imaging of Epithelial Morphogenesis in Three-Dimensional
   Organotypic Cultures ....................................... 623
   Andrew J. Ewald
44 High-Speed Optical Coherence Tomography Imaging of the
   Beating Avian Embryonic Heart .............................. 647
   Shi Gu, Michael W. Jenkins, Michiko Watanabe, and Andrew
   M. Rollins
45 Imaging Mouse Embryonic Cardiovascular Development ......... 659
   Irina V. Larina, Monica D. Garcia, Tegy J. Vadakkan, 
   Kirill V. Larin, and Mary E. Dickinson
46 Micro-Ultrasound and Its Application to Longitudinal
   Studies of Mouse Eye Development and Disease ............... 669
   F. Stuart Foster and Allison S. Brown

SECTION 4. WHOLE EMBRYOS: GENE EXPRESSION, PHENOTYPING, AND
           DATABASES
47 Quantitative Imaging of Gene Expression in Drosophila 
   Embryos .................................................... 683
   Svetlana Surkona, Ekaterina Myasnikova, Konstantin N.
   Kozlov, Andrei Pisarev, John Reinitz, and Maria Samsonova
48 Three-Dimensional Morphology and Gene Expression Mapping
   for the Drosophila Blastoderm .............................. 699
   David W. Knowles
49 From Confocal Imaging to 3D Model: A Protocol for 
   Creating 3D Digital Replicas of Ascidian Embryos ........... 711
   François B. Robin, Delphine Dauga, Olivier Tassy, Daniel
   Sobral, Fabrice Daian, and Patrick Lemaire
50 Preparation of Fixed Xenopus Embryos for Confocal 
   Imaging .................................................... 729
   John B. Wallingford
51 Optical Projection Tomography of Vertebrate Embryo
   Development ................................................ 739
   Laura Quintana and James Sharpe
52 X-Ray Microtomographic Imaging of Vertebrate Embryos ....... 753
   Brian D. Metscher
53 Episcopic Three-Dimensional Imaging of Embryos ............. 765
   Timothy J. Mohun and Wolfgang J. Weninger
54 High-Throughput Analysis of Mouse Embryos by Magnetic
   Resonance Imaging .......................................... 777
   Simon D. Bamforth, Jürgen E. Schneider, and Shoumo 
   Bhattacharya
55 MRI in Developmental Biology and the Construction of
   Developmental Atlases ...................................... 789
   Seth W. Ruffins and Russell E. Jacobs
56 Automated Lineage and Expression Profiling in Live
   Caenorhabditis elegans Embryos ............................. 799
   John Isaac Murray and Zhirong Bao
57 Imaging the Development of Entire Zebrafish and 
   Drosophila Embryos with Digital Scanned Laser Light-Sheet
   Fluorescence Microscopy (DSLM) ............................. 815
   Philipp J. Keller, Annette D. Schmidt, Jochen Wittbrodt,
   and Ernst H.K. Stelzer

SECTION 5. APPENDICES
1  Electromagnetic Spectrum ................................... 827
   Marilu Hoeppner
2  Fluorescence Microscopy Filters and Excitation/Emission
   Spectra .................................................... 829
3  Safe Operation of a Fluorescence Microscope ................ 833
   George McNamara
4  Microscope Objective Lenses ................................ 835
5  Resources for Live Imaging of Drosophila ................... 837
6  Glossary of Imaging Terms .................................. 845
7  Cautions ................................................... 855

Index ......................................................... 863


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