Protein structure prediction (New York, 2014). - ОГЛАВЛЕНИЕ / CONTENTS
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ОбложкаProtein structure prediction / ed. by D.Kihara. - 3rd ed. - New York: Humana Press/Springer Science+Business Media, 2014. - xi, 253 p.: ill. - (Methods in molecular biology; 1137) (Springer protocols). - Bibliogr. at the end of the chapters. - Ind.: p.251-253. - ISBN 978-1-4939-0365-8; ISSN 1064-3745
Шифр: (Pr 852/1137) 02

 

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Оглавление / Contents
 
Preface ......................................................... v
Contributors ................................................... ix
1  Protein Structure Modeling with MODELLER ..................... 1
   Benjamin Webb and Andrej Sali
2  RaptorX server: A Resource for Template-Based Protein 
   Structure Modeling .......................................... 17
   Morten Källberg, Gobar Margaryan, Sheng Wang, Jianzhu Ma,
   and Jinbo Xu
3  The MULTICOM Protein Tertiary Structure Prediction System ... 29
   Jilong Li, Debswapna Bbattacharya, Renzhi Cao, Badri 
   Adhikari, Xin Deng, Jesse Eickholt, and Jianlin Cheng
4  Modeling of Protein Side-Chain Conformations with RASP ...... 43
   Zhichao Miao, Tang Cao, and Taijiao Jiang
5  Direct Coupling Analysis for Protein Contact Prediction ..... 55
   Faruck Morcos, Terence Hwa, José N. Onuchic, and Martin
   Weigt
6  ITScorePro: An Efficient Scoring Program for Evaluating
   the Energy Scores of Protein Structures for Structure
   Prediction .................................................. 71
   Sheng-You Huang and Xiaoqin Zou
7  Assessing the Quality of Modelled 3D Protein Structures
   Using the ModFOLD Server .................................... 83
   Daniel Barry Roche, Maria Teresa Buenavista, and Liam 
   James McGujfin
8  3D-SURFER 2.0: Web Platform for Real-Time Search
   and Characterization of Protein Surfaces ................... 105
   Yi Xiong, Juan Esquivel-Rodriguez, Lee Sael, and Daisuke 
   Kihara
9  SPOT-Seq-RNA: Predicting Protein-RNA Complex Structure 
   and RNA-Binding Function by Fold Recognition and Binding 
   Affinity Prediction ........................................ 119
   Yuedong Yang, Huiying Zhao, Jihua Wang, and Yaoqi Zhou
10 POODLE: Tools Predicting Intrinsically Disordered Regions
   of Amino Acid Sequence ..................................... 131
   Каnа Shimizu
11 Prediction of Intrinsic Disorder in Proteins Using MFDp2 ... 147
   Marcin J. Mizianty, Vladimir Uversky, and Lukasz Kurgan
12 Modeling Protein-Protein Complexes Using the HADDOCK
   Webserver "Modeling Protein Complexes with HADDOCK" ........ 163
   Gydo C.P. van Zundert and Alexandre M.J.J. Bonvin
13 Predicting the Structure of Protein-Protein Complexes
   Using the SwarmDock Web Server ............................. 181
   Mieczyslaw Torchala and Paul A. Bates
14 DOCK/PIERR: Web Server for Structure Prediction of
   Protein-Protein Complexes .................................. 199
   Shruthi Viswanath, D.V.S. Ravikant, and Ron Elber
15 Pairwise and Multimeric Protein-Protein Docking
   Using the LZerD Program Suite .............................. 209
   Juan Esquivel-Rodriguez, Vianney Filos-Gonzalez, Bin Li, 
   and Daisuke Kihara
16 Protocols for Efficient Simulations of Long-Time Protein
   Dynamics Using Coarse-Grained CABS Model ................... 235
   Michal Jamroz, Andrzej Kolinski, and Sebastian Kmiecik
Index ......................................................... 257


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